LCOV - code coverage report
Current view: top level - TPC/TPCbase - AliTPCCalROC.cxx (source / functions) Hit Total Coverage
Test: coverage.info Lines: 36 548 6.6 %
Date: 2016-06-14 17:26:59 Functions: 10 39 25.6 %

          Line data    Source code
       1             : /**************************************************************************
       2             :  * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
       3             :  *                                                                        *
       4             :  * Author: The ALICE Off-line Project.                                    *
       5             :  * Contributors are mentioned in the code where appropriate.              *
       6             :  *                                                                        *
       7             :  * Permission to use, copy, modify and distribute this software and its   *
       8             :  * documentation strictly for non-commercial purposes is hereby granted   *
       9             :  * without fee, provided that the above copyright notice appears in all   *
      10             :  * copies and that both the copyright notice and this permission notice   *
      11             :  * appear in the supporting documentation. The authors make no claims     *
      12             :  * about the suitability of this software for any purpose. It is          *
      13             :  * provided "as is" without express or implied warranty.                  *
      14             :  **************************************************************************/
      15             : 
      16             : 
      17             : /// \class AliTPCCalROC
      18             : ///
      19             : ///     Calibration base class for a single ROC
      20             : ///     Contains one float value per pad
      21             : ///     mapping of the pads taken form AliTPCROC
      22             : ///
      23             : 
      24             : // ROOT includes 
      25             : #include "TMath.h"
      26             : #include "TClass.h"
      27             : #include "TFile.h"
      28             : #include "TH1F.h"
      29             : #include "TH2F.h"
      30             : #include "TArrayI.h"
      31             : 
      32             : //
      33             : //
      34             : #include "AliTPCCalROC.h"
      35             : #include "AliMathBase.h"
      36             : 
      37             : #include "TRandom3.h"      // only needed by the AliTPCCalROCTest() method
      38             : 
      39             : /// \cond CLASSIMP
      40          24 : ClassImp(AliTPCCalROC)
      41             : /// \endcond
      42             : 
      43             : 
      44             : //_____________________________________________________________________________
      45             : AliTPCCalROC::AliTPCCalROC()
      46        4896 :              :TNamed(),
      47        4896 :               fSector(0),
      48        4896 :               fNChannels(0),
      49        4896 :               fNRows(0),
      50        4896 :               fkIndexes(0),
      51        4896 :               fData(0)
      52       24480 : {
      53             :   //
      54             :   // Default constructor
      55             :   //
      56             : 
      57        9792 : }
      58             : 
      59             : //_____________________________________________________________________________
      60             : AliTPCCalROC::AliTPCCalROC(UInt_t  sector)
      61         648 :              :TNamed(),
      62         648 :               fSector(0),
      63         648 :               fNChannels(0),
      64         648 :               fNRows(0),
      65         648 :               fkIndexes(0),
      66         648 :               fData(0)
      67        3240 : {
      68             :   /// Constructor that initializes a given sector
      69             : 
      70         648 :   fSector = sector;
      71        1296 :   fNChannels    =  AliTPCROC::Instance()->GetNChannels(fSector);
      72        1296 :   fNRows        =  AliTPCROC::Instance()->GetNRows(fSector);
      73        1296 :   fkIndexes      =  AliTPCROC::Instance()->GetRowIndexes(fSector);
      74        1296 :   fData = new Float_t[fNChannels];
      75         648 :   Reset();
      76             : 
      77        1296 : }
      78             : 
      79             : //_____________________________________________________________________________
      80             : AliTPCCalROC::AliTPCCalROC(const AliTPCCalROC &c)
      81           0 :              :TNamed(c),
      82           0 :               fSector(0),
      83           0 :               fNChannels(0),
      84           0 :               fNRows(0),
      85           0 :               fkIndexes(0),
      86           0 :               fData(0)
      87           0 : {
      88             :   /// AliTPCCalROC copy constructor
      89             : 
      90           0 :   fSector = c.fSector;
      91           0 :   fNChannels    =  AliTPCROC::Instance()->GetNChannels(fSector);
      92           0 :   fNRows        =  AliTPCROC::Instance()->GetNRows(fSector);
      93           0 :   fkIndexes      =  AliTPCROC::Instance()->GetRowIndexes(fSector);
      94             :   //
      95           0 :   fData   = new Float_t[fNChannels];
      96           0 :   for (UInt_t  idata = 0; idata< fNChannels; idata++) fData[idata] = c.fData[idata];
      97           0 : }
      98             : //____________________________________________________________________________
      99             : AliTPCCalROC & AliTPCCalROC::operator =(const AliTPCCalROC & param)
     100             : {
     101             :   /// assignment operator - dummy
     102             : 
     103           0 :   if (this == &param) return (*this);
     104           0 :   fSector       = param.fSector;
     105           0 :   fNChannels    =  AliTPCROC::Instance()->GetNChannels(fSector);
     106           0 :   fNRows        =  AliTPCROC::Instance()->GetNRows(fSector);
     107           0 :   fkIndexes     =  AliTPCROC::Instance()->GetRowIndexes(fSector);
     108             :   //
     109           0 :   if (fData) delete [] fData;
     110           0 :   fData         = new Float_t[fNChannels];
     111           0 :   for (UInt_t  idata = 0; idata< fNChannels; idata++) fData[idata] = param.fData[idata];
     112           0 :   return (*this);
     113           0 : }
     114             : 
     115             : 
     116             : //_____________________________________________________________________________
     117             : AliTPCCalROC::~AliTPCCalROC()
     118        7344 : {
     119             :   /// AliTPCCalROC destructor
     120             : 
     121        1224 :   if (fData) {
     122        2448 :     delete [] fData;
     123        1224 :     fData = 0;
     124        1224 :   }
     125        3672 : }
     126             : 
     127             : 
     128             : 
     129             : void AliTPCCalROC::Streamer(TBuffer &R__b)
     130             : {
     131             :    /// Stream an object of class AliTPCCalROC.
     132             : 
     133       14688 :    if (R__b.IsReading()) {
     134        9792 :       AliTPCCalROC::Class()->ReadBuffer(R__b, this);
     135        4896 :       fkIndexes =  AliTPCROC::Instance()->GetRowIndexes(fSector);
     136        4896 :    } else {
     137           0 :       AliTPCCalROC::Class()->WriteBuffer(R__b,this);
     138             :    }
     139        4896 : }
     140             : 
     141             : void AliTPCCalROC::Print(Option_t* /*option*/) const{
     142             :   //
     143             :   // Print summary content
     144             :   //
     145           0 :   printf("|ROC%d|\t%f|\t%f|\t%f|\n",fSector, GetMean(),GetMedian(),GetRMS());
     146           0 : }
     147             : 
     148             : 
     149             : 
     150             : //
     151             : 
     152             : Bool_t AliTPCCalROC::MedianFilter(Int_t deltaRow, Int_t deltaPad, AliTPCCalROC* outlierROC,  Bool_t doEdge){
     153             :   ///   Modify content of the object - raplace value by median in neighorhood
     154             : 
     155           0 :   Float_t *newBuffer=new Float_t[fNChannels] ;
     156           0 :   Double_t *cacheBuffer=new Double_t[fNChannels];
     157             :   //
     158           0 :   for (Int_t iRow=0; iRow< Int_t(fNRows); iRow++){
     159           0 :     Int_t nPads=GetNPads(iRow); // number of rows in current row
     160           0 :     for (Int_t iPad=0; iPad<nPads; iPad++){
     161           0 :       Double_t value=GetValue(iRow,iPad);
     162             :       Int_t counter=0;
     163             :       //
     164           0 :       for (Int_t dRow=-deltaRow; dRow<=deltaRow; dRow++){
     165           0 :         Int_t jRow=iRow+dRow;  //take the row - mirror if ouside of range
     166             :         Float_t sign0=1.;
     167           0 :         if (jRow<0) sign0=-1.;
     168           0 :         if (UInt_t(jRow)>=fNRows) sign0=-1.; 
     169           0 :         Int_t jPads= GetNPads(iRow+sign0*dRow);
     170           0 :         Int_t offset=(nPads-jPads)/2.;
     171             :         //
     172           0 :         for (Int_t dPad=-deltaPad; dPad<=deltaPad; dPad++){
     173             :           Float_t sign=sign0;
     174           0 :           Int_t jPad=iPad+dPad+offset;  //take the pad - mirror if ouside of range
     175             :           Int_t kRow=jRow;
     176           0 :           if (jPad<0) sign=-1;
     177           0 :           if (jPad>=jPads) sign=-1;
     178           0 :           if (sign<0){
     179           0 :             kRow=iRow-dRow;
     180           0 :             jPad=iPad-dPad+offset;
     181           0 :             if (!doEdge) continue;
     182             :           }       
     183           0 :           if (IsInRange(UInt_t(kRow),jPad)){
     184           0 :             Bool_t isOutlier=(outlierROC==NULL)?kFALSE:outlierROC->GetValue(kRow,jPad)>0;
     185           0 :             if (!isOutlier){
     186           0 :               cacheBuffer[counter]=sign*(GetValue(kRow,jPad)-value);
     187           0 :               counter++;
     188           0 :             }
     189           0 :           }
     190           0 :         }
     191             :       }
     192           0 :       newBuffer[fkIndexes[iRow]+iPad]=0.;
     193           0 :       if (counter>1) newBuffer[fkIndexes[iRow]+iPad] = TMath::Median(counter, cacheBuffer)+value;
     194             :     }
     195             :   }
     196           0 :   memcpy(fData, newBuffer,GetNchannels()*sizeof(Float_t));
     197           0 :   delete []newBuffer;
     198           0 :   delete []cacheBuffer;
     199           0 :   return kTRUE;
     200             : }
     201             : 
     202             : 
     203             : 
     204             : Bool_t AliTPCCalROC::LTMFilter(Int_t deltaRow, Int_t deltaPad, Float_t fraction, Int_t type, AliTPCCalROC* outlierROC,  Bool_t doEdge){
     205             :   ///   Modify content of the class
     206             :   ///   write LTM mean or median
     207             : 
     208           0 :   if (fraction<0 || fraction>1) return kFALSE;
     209           0 :   Float_t *newBuffer=new Float_t[fNChannels] ;
     210           0 :   Double_t *cacheBuffer=new Double_t[fNChannels];
     211             :   //
     212           0 :   for (Int_t iRow=0; iRow< Int_t(fNRows); iRow++){
     213           0 :     Int_t nPads=GetNPads(iRow); // number of rows in current row
     214           0 :     for (Int_t iPad=0; iPad<nPads; iPad++){
     215           0 :       Double_t value=GetValue(iRow,iPad);
     216             :       Int_t counter=0;
     217             :       //
     218           0 :       for (Int_t dRow=-deltaRow; dRow<=deltaRow; dRow++){
     219           0 :         Int_t jRow=iRow+dRow;  //take the row - mirror if ouside of range
     220             :         Float_t sign0=1.;
     221           0 :         if (jRow<0) sign0=-1.;
     222           0 :         if (UInt_t(jRow)>=fNRows) sign0=-1.; 
     223           0 :         Int_t jPads= GetNPads(iRow+sign0*dRow);
     224           0 :         Int_t offset=(nPads-jPads)/2.;
     225             :         //
     226           0 :         for (Int_t dPad=-deltaPad; dPad<=deltaPad; dPad++){
     227             :           Float_t sign=sign0;
     228           0 :           Int_t jPad=iPad+dPad+offset;  //take the pad - mirror if ouside of range
     229             :           Int_t kRow=jRow;
     230           0 :           if (jPad<0) sign=-1;
     231           0 :           if (jPad>=jPads) sign=-1;
     232           0 :           if (sign<0){
     233           0 :             if (!doEdge) continue;
     234           0 :             kRow=iRow-dRow;
     235           0 :             jPad=iPad-dPad+offset;
     236           0 :           } 
     237           0 :           if (IsInRange(UInt_t(kRow),jPad)){
     238           0 :             Bool_t isOutlier=(outlierROC==NULL)?kFALSE:outlierROC->GetValue(kRow,jPad)>0;
     239           0 :             if (!isOutlier){
     240           0 :               cacheBuffer[counter]=sign*(GetValue(kRow,jPad)-value);
     241           0 :               counter++;
     242           0 :             }
     243           0 :           }
     244           0 :         }
     245             :       }
     246           0 :       Double_t mean=0,rms=0;
     247           0 :       if (TMath::Nint(fraction*Double_t(counter))>1 ) AliMathBase::EvaluateUni(counter,cacheBuffer,mean,rms,TMath::Nint(fraction*Double_t(counter)));
     248           0 :       mean+=value;
     249           0 :       newBuffer[fkIndexes[iRow]+iPad] = (type==0)? mean:rms;
     250           0 :     }
     251             :   }
     252           0 :   memcpy(fData, newBuffer,GetNchannels()*sizeof(Float_t));
     253           0 :   delete []newBuffer;
     254           0 :   delete []cacheBuffer;
     255             :   return kTRUE;
     256           0 : }
     257             : 
     258             : Bool_t AliTPCCalROC::Convolute(Double_t sigmaPad, Double_t sigmaRow, AliTPCCalROC*outlierROC, TF1 */*fpad*/, TF1 */*frow*/){
     259             :   /// convolute the calibration with function fpad,frow
     260             :   /// in range +-4 sigma
     261             : 
     262           0 :   Float_t *newBuffer=new Float_t[fNChannels] ;
     263             :   //
     264           0 :   for (Int_t iRow=0; iRow< Int_t(fNRows); iRow++){
     265           0 :     Int_t nPads=GetNPads(iRow); // number of rows in current row
     266           0 :     for (Int_t iPad=0; iPad<nPads; iPad++){
     267           0 :       Int_t jRow0=TMath::Max(TMath::Nint(iRow-sigmaRow*4.),0);
     268           0 :       Int_t jRow1=TMath::Min(TMath::Nint(iRow+sigmaRow*4.),Int_t(fNRows));
     269           0 :       Int_t jPad0=TMath::Max(TMath::Nint(iPad-sigmaPad*4.),0);
     270           0 :       Int_t jPad1=TMath::Min(TMath::Nint(iRow+sigmaPad*4.),Int_t(nPads));
     271             :       //
     272             :       Double_t sumW=0;
     273             :       Double_t sumCal=0;
     274           0 :       for (Int_t jRow=jRow0; jRow<=jRow1; jRow++){
     275           0 :         for (Int_t jPad=jPad0; jPad<=jPad1; jPad++){
     276           0 :           if (!IsInRange(jRow,jPad)) continue;
     277           0 :           Bool_t isOutlier=(outlierROC==NULL)?kFALSE:outlierROC->GetValue(jRow,jPad)>0;
     278           0 :           if (!isOutlier){
     279           0 :             Double_t weight= TMath::Gaus(jPad,iPad,sigmaPad)*TMath::Gaus(jRow,iRow,sigmaRow);
     280           0 :             sumCal+=weight*GetValue(jRow,jPad);
     281           0 :             sumW+=weight;
     282           0 :           }
     283           0 :         }
     284             :       }
     285           0 :       if (sumW>0){
     286           0 :         sumCal/=sumW;
     287           0 :         newBuffer[fkIndexes[iRow]+iPad]=sumCal;
     288           0 :       }
     289             :     }
     290             :   }
     291           0 :   memcpy(fData, newBuffer,GetNchannels()*sizeof(Float_t));
     292           0 :   delete []newBuffer;
     293           0 :   return kTRUE;
     294             : }
     295             : 
     296             : 
     297             : //
     298             : 
     299             : 
     300             : 
     301             : 
     302             : 
     303             : // algebra fuctions:
     304             : 
     305             : void AliTPCCalROC::Add(Float_t c1){
     306             :   /// add c1 to each channel of the ROC  
     307             : 
     308           0 :   for (UInt_t  idata = 0; idata< fNChannels; idata++) fData[idata]+=c1;
     309           0 : }
     310             : 
     311             : 
     312             : void AliTPCCalROC::Multiply(Float_t c1){
     313             :   /// multiply each channel of the ROC with c1
     314             : 
     315           0 :   for (UInt_t  idata = 0; idata< fNChannels; idata++) fData[idata]*=c1;
     316           0 : }
     317             : 
     318             : 
     319             : void AliTPCCalROC::Add(const AliTPCCalROC * roc, Double_t c1){
     320             :   /// multiply AliTPCCalROC roc by c1 and add each channel to the coresponing channel in the ROC
     321             :   ///  - pad by pad 
     322             : 
     323           0 :   if (!roc) return;
     324           0 :   for (UInt_t  idata = 0; idata< fNChannels; idata++){
     325           0 :     fData[idata]+=roc->fData[idata]*c1;
     326             :   }
     327           0 : }
     328             : 
     329             : 
     330             : void AliTPCCalROC::Multiply(const AliTPCCalROC*  roc) {
     331             :   /// multiply each channel of the ROC with the coresponding channel of 'roc'
     332             :   ///     - pad by pad -
     333             : 
     334           0 :   if (!roc) return;
     335           0 :   for (UInt_t  idata = 0; idata< fNChannels; idata++){
     336           0 :     fData[idata]*=roc->fData[idata];
     337             :   }
     338           0 : }
     339             : 
     340             : 
     341             : void AliTPCCalROC::Divide(const AliTPCCalROC*  roc) {
     342             :   /// divide each channel of the ROC by the coresponding channel of 'roc'
     343             :   ///     - pad by pad -
     344             : 
     345           0 :   if (!roc) return;
     346             :   Float_t kEpsilon=0.00000000000000001;
     347           0 :   for (UInt_t  idata = 0; idata< fNChannels; idata++){
     348           0 :     if (TMath::Abs(roc->fData[idata])>kEpsilon)
     349           0 :       fData[idata]/=roc->fData[idata];
     350             :   }
     351           0 : }
     352             : 
     353             : void AliTPCCalROC::Reset()
     354             : {
     355             :   /// reset to ZERO
     356             :   
     357        1296 :   memset(fData,0,sizeof(Float_t)*fNChannels); // set all values to 0
     358         648 : }
     359             : 
     360             : //____________________________________________________________
     361             : Double_t AliTPCCalROC::GetStats(EStatType statType, AliTPCCalROC *const outlierROC, EPadType padType) const
     362             : {
     363             :   ///  returns the mean or median or RMS value depending on the statType 
     364             :   ///  of the ROC or medium or long pad region
     365             :   ///  pads with value != 0 in outlierROC are not used for the calculation
     366             :   ///  return 0 if no data is accepted by the outlier cuts 
     367             : 
     368           0 :   if(fSector<36) padType=kAll;
     369           0 :   if (!outlierROC) {
     370           0 :     if(padType==kAll) {
     371           0 :       if     (statType==kMean)       return TMath::Mean      (fNChannels, fData);
     372           0 :       else if(statType==kMedian)     return TMath::Median    (fNChannels, fData);
     373           0 :       else if(statType==kRMS)        return TMath::RMS       (fNChannels, fData);
     374           0 :       else if(statType==kMinElement) return TMath::MinElement(fNChannels, fData);
     375           0 :       else if(statType==kMaxElement) return TMath::MaxElement(fNChannels, fData);
     376             :     }
     377           0 :     else if(padType==kOROCmedium) {
     378           0 :       if     (statType==kMean)       return TMath::Mean      (fkIndexes[64], fData);
     379           0 :       else if(statType==kMedian)     return TMath::Median    (fkIndexes[64], fData);
     380           0 :       else if(statType==kRMS)        return TMath::RMS       (fkIndexes[64], fData);
     381           0 :       else if(statType==kMinElement) return TMath::MinElement(fkIndexes[64], fData);
     382           0 :       else if(statType==kMaxElement) return TMath::MaxElement(fkIndexes[64], fData);
     383             :     }
     384           0 :     else if(padType==kOROClong) {
     385           0 :       const Int_t offset=fkIndexes[64];
     386           0 :       if     (statType==kMean)       return TMath::Mean      (fNChannels-offset, fData+offset);
     387           0 :       else if(statType==kMedian)     return TMath::Median    (fNChannels-offset, fData+offset);
     388           0 :       else if(statType==kRMS)        return TMath::RMS       (fNChannels-offset, fData+offset);
     389           0 :       else if(statType==kMinElement) return TMath::MinElement(fNChannels-offset, fData+offset);
     390           0 :       else if(statType==kMaxElement) return TMath::MaxElement(fNChannels-offset, fData+offset);
     391           0 :     }
     392             :   }//end of no outlierROC
     393             : 
     394           0 :   Float_t ddata[fNChannels];
     395             : 
     396             :   Int_t nPoints = 0;
     397             :   UInt_t indexMin = 0;
     398           0 :   UInt_t indexMax = fNChannels;
     399           0 :   if(padType==kOROCmedium) indexMax=fkIndexes[64];
     400           0 :   else if(padType==kOROClong) indexMin=fkIndexes[64];
     401             : 
     402           0 :   for (UInt_t i=indexMin;i<indexMax;i++) {
     403           0 :     if (outlierROC->GetValue(i)>1e-20) continue;
     404           0 :     ddata[nPoints]= fData[i];
     405           0 :     nPoints++;
     406           0 :   }
     407             :   Double_t value = 0;
     408           0 :   if(nPoints>0){
     409           0 :     if     (statType==kMean)       value = TMath::Mean      (nPoints, ddata);
     410           0 :     else if(statType==kMedian)     value = TMath::Median    (nPoints, ddata);
     411           0 :     else if(statType==kRMS)        value = TMath::RMS       (nPoints, ddata);
     412           0 :     else if(statType==kMinElement) value = TMath::MinElement(nPoints, ddata);
     413           0 :     else if(statType==kMaxElement) value = TMath::MaxElement(nPoints, ddata);
     414             :   }
     415             :   return value;
     416           0 : }
     417             : 
     418             : //_____________________________________________________________________________
     419             : Double_t AliTPCCalROC::GetMean(AliTPCCalROC *const outlierROC,EPadType padType) const
     420             : {
     421             :   ///  returns the mean value of the ROC
     422             :   ///  pads with value != 0 in outlierROC are not used for the calculation
     423             :   ///  return 0 if no data is accepted by the outlier cuts 
     424             : 
     425           0 :   return GetStats(kMean,outlierROC,padType);
     426             : }
     427             : 
     428             : //_____________________________________________________________________________
     429             : Double_t AliTPCCalROC::GetMedian(AliTPCCalROC *const outlierROC,EPadType padType) const
     430             : {
     431             :   ///  returns the median value of the ROC
     432             :   ///  pads with value != 0 in outlierROC are not used for the calculation
     433             :   ///  return 0 if no data is accepted by the outlier cuts 
     434             : 
     435           0 :   return GetStats(kMedian,outlierROC,padType);
     436             : }
     437             : 
     438             : //_____________________________________________________________________________
     439             : Double_t AliTPCCalROC::GetRMS(AliTPCCalROC *const outlierROC,EPadType padType) const
     440             : {
     441             :    ///  returns the RMS value of the ROC
     442             :    ///  pads with value != 0 in outlierROC are not used for the calculation
     443             :    ///  return 0 if no data is accepted by the outlier cuts 
     444             : 
     445           0 :   return GetStats(kRMS,outlierROC,padType);
     446             : }
     447             : 
     448             : //_____________________________________________________________________________
     449             : Double_t AliTPCCalROC::GetMinElement(AliTPCCalROC *const outlierROC,EPadType padType) const
     450             : {
     451             :   ///  returns the MinElement value of the ROC
     452             :   ///  pads with value != 0 in outlierROC are not used for the calculation
     453             :   ///  return 0 if no data is accepted by the outlier cuts
     454             : 
     455           0 :   return GetStats(kMinElement,outlierROC,padType);
     456             : }
     457             : 
     458             : //_____________________________________________________________________________
     459             : Double_t AliTPCCalROC::GetMaxElement(AliTPCCalROC *const outlierROC,EPadType padType) const
     460             : {
     461             :   ///  returns the MaxElement value of the ROC
     462             :   ///  pads with value != 0 in outlierROC are not used for the calculation
     463             :   ///  return 0 if no data is accepted by the outlier cuts
     464             : 
     465           0 :   return GetStats(kMaxElement,outlierROC,padType);
     466             : }
     467             : 
     468             : //_____________________________________________________________________________
     469             : Double_t AliTPCCalROC::GetLTM(Double_t *const sigma, Double_t fraction, AliTPCCalROC *const outlierROC, EPadType padType){
     470             :   ///  returns the LTM and sigma
     471             :   ///  pads with value != 0 in outlierROC are not used for the calculation
     472             :   ///  return 0 if no data is accepted by the outlier cuts 
     473             :   ///  LTM for different padType
     474             : 
     475           0 :   if(fSector<36) padType=kAll;
     476           0 :   Double_t ddata[fNChannels];
     477             :   UInt_t nPoints = 0;
     478             :   UInt_t indexMin = 0;
     479           0 :   UInt_t indexMax = fNChannels;
     480           0 :   if(padType==kOROCmedium) indexMax=fkIndexes[64];
     481           0 :   else if(padType==kOROClong) indexMin=fkIndexes[64];
     482           0 :   for (UInt_t i=indexMin;i<indexMax;i++) {
     483           0 :      if (outlierROC && (outlierROC->GetValue(i) >1e-20)) continue;
     484           0 :      ddata[nPoints]= fData[i];
     485           0 :      nPoints++;
     486           0 :   }
     487             : 
     488           0 :   Double_t ltm =0, lsigma=0;
     489           0 :   if(nPoints>0) {
     490           0 :     Int_t hh = TMath::Min(TMath::Nint(fraction *nPoints), Int_t(nPoints));
     491           0 :     AliMathBase::EvaluateUni(nPoints,ddata, ltm, lsigma, hh);
     492           0 :     if (sigma) *sigma=lsigma;
     493           0 :   }
     494             :   
     495           0 :   return ltm;
     496           0 : }
     497             : 
     498             : //_____________________________________________________________________________
     499             : TH1F * AliTPCCalROC::MakeHisto1D(Float_t min, Float_t max,Int_t type){
     500             :   /// make 1D histo
     501             :   /// type -1 = user defined range
     502             :   ///       0 = nsigma cut nsigma=min
     503             :   ///       1 = delta cut around median delta=min
     504             : 
     505           0 :   if (type>=0){
     506           0 :     if (type==0){
     507             :       // nsigma range
     508           0 :       Float_t mean  = GetMean();
     509           0 :       Float_t sigma = GetRMS();
     510           0 :       Float_t nsigma = TMath::Abs(min);
     511           0 :       min = mean-nsigma*sigma;
     512           0 :       max = mean+nsigma*sigma;
     513           0 :     }
     514           0 :     if (type==1){
     515             :       // fixed range
     516           0 :       Float_t mean   = GetMedian();
     517             :       Float_t  delta = min;
     518           0 :       min = mean-delta;
     519           0 :       max = mean+delta;
     520           0 :     }
     521           0 :     if (type==2){
     522             :       //
     523             :       // LTM mean +- nsigma
     524             :       //
     525           0 :       Double_t sigma;
     526           0 :       Float_t mean  = GetLTM(&sigma,max);
     527           0 :       sigma*=min;
     528           0 :       min = mean-sigma;
     529           0 :       max = mean+sigma;
     530           0 :     }
     531             :   }
     532           0 :   TString name=Form("%s ROC 1D%d",GetTitle(),fSector);
     533           0 :   TH1F * his = new TH1F(name.Data(),name.Data(),100, min,max);
     534           0 :   for (UInt_t irow=0; irow<fNRows; irow++){
     535           0 :     UInt_t npads = (Int_t)GetNPads(irow);
     536           0 :     for (UInt_t ipad=0; ipad<npads; ipad++){
     537           0 :       his->Fill(GetValue(irow,ipad));
     538             :     }
     539             :   }
     540             :   return his;
     541           0 : }
     542             : 
     543             : 
     544             : 
     545             : TH2F * AliTPCCalROC::MakeHisto2D(Float_t min, Float_t max,Int_t type){
     546             :   /// make 2D histo
     547             :   /// type -1 = user defined range
     548             :   ///       0 = nsigma cut nsigma=min
     549             :   ///       1 = delta cut around median delta=min
     550             : 
     551           0 :   if (type>=0){
     552           0 :     if (type==0){
     553             :       // nsigma range
     554           0 :       Float_t mean  = GetMean();
     555           0 :       Float_t sigma = GetRMS();
     556           0 :       Float_t nsigma = TMath::Abs(min);
     557           0 :       min = mean-nsigma*sigma;
     558           0 :       max = mean+nsigma*sigma;
     559           0 :     }
     560           0 :     if (type==1){
     561             :       // fixed range
     562           0 :       Float_t mean   = GetMedian();
     563             :       Float_t  delta = min;
     564           0 :       min = mean-delta;
     565           0 :       max = mean+delta;
     566           0 :     }
     567           0 :     if (type==2){
     568           0 :       Double_t sigma;
     569           0 :       Float_t mean  = GetLTM(&sigma,max);
     570           0 :       sigma*=min;
     571           0 :       min = mean-sigma;
     572           0 :       max = mean+sigma;
     573             : 
     574           0 :     }
     575             :   }
     576             :   UInt_t maxPad = 0;
     577           0 :   for (UInt_t irow=0; irow<fNRows; irow++){
     578           0 :     if (GetNPads(irow)>maxPad) maxPad = GetNPads(irow);
     579             :   }
     580             : 
     581           0 :   TString name=Form("%s ROC%d",GetTitle(),fSector);
     582           0 :   TH2F * his = new TH2F(name.Data(),name.Data(),fNRows+10,-5, fNRows+5, maxPad+10, -(Int_t(maxPad/2))-5, maxPad/2+5);
     583           0 :   for (UInt_t irow=0; irow<fNRows; irow++){
     584           0 :     UInt_t npads = (Int_t)GetNPads(irow);
     585           0 :     for (UInt_t ipad=0; ipad<npads; ipad++){
     586           0 :       his->Fill(irow+0.5,Int_t(ipad)-Int_t(npads/2)+0.5,GetValue(irow,ipad));
     587             :     }
     588             :   }
     589           0 :   his->SetMaximum(max);
     590           0 :   his->SetMinimum(min);
     591             :   return his;
     592           0 : }
     593             : 
     594             : TH2F * AliTPCCalROC::MakeHistoOutliers(Float_t delta, Float_t fraction, Int_t type){
     595             :   /// Make Histogram with outliers
     596             :   /// mode = 0 - sigma cut used
     597             :   /// mode = 1 - absolute cut used
     598             :   /// fraction - fraction of values used to define sigma
     599             :   /// delta - in mode 0 - nsigma cut
     600             :   ///            mode 1 - delta cut
     601             : 
     602           0 :   Double_t sigma;
     603           0 :   Float_t mean  = GetLTM(&sigma,fraction);  
     604           0 :   if (type==0) delta*=sigma; 
     605             :   UInt_t maxPad = 0;
     606           0 :   for (UInt_t irow=0; irow<fNRows; irow++){
     607           0 :     if (GetNPads(irow)>maxPad) maxPad = GetNPads(irow);
     608             :   }
     609             : 
     610           0 :   TString name=Form("%s ROC Outliers%d",GetTitle(),fSector);
     611           0 :   TH2F * his = new TH2F(name.Data(),name.Data(),fNRows+10,-5, fNRows+5, maxPad+10, -(Int_t(maxPad/2))-5, maxPad/2+5);
     612           0 :   for (UInt_t irow=0; irow<fNRows; irow++){
     613           0 :     UInt_t npads = (Int_t)GetNPads(irow);
     614           0 :     for (UInt_t ipad=0; ipad<npads; ipad++){
     615           0 :       if (TMath::Abs(GetValue(irow,ipad)-mean)>delta)
     616           0 :         his->Fill(irow+0.5,Int_t(ipad)-Int_t(npads/2)+0.5,1);
     617             :     }
     618             :   }
     619             :   return his;
     620           0 : }
     621             : 
     622             : 
     623             : 
     624             : void AliTPCCalROC::Draw(Option_t* opt){
     625             :   /// create histogram with values and draw it
     626             : 
     627             :   TH1 * his=0; 
     628           0 :   TString option=opt;
     629           0 :   option.ToUpper();
     630           0 :   if (option.Contains("1D")){
     631           0 :     his = MakeHisto1D();
     632           0 :   }
     633             :   else{
     634           0 :     his = MakeHisto2D();
     635             :   }
     636           0 :   his->Draw(option);
     637           0 : }
     638             : 
     639             : 
     640             : 
     641             : 
     642             : 
     643             : void AliTPCCalROC::Test() {
     644             :   /// example function to show functionality and test AliTPCCalROC
     645             : 
     646             :   Float_t kEpsilon=0.00001;
     647             :   
     648             :   // create CalROC with defined values
     649           0 :   AliTPCCalROC  roc0(0);  
     650           0 :   for (UInt_t irow = 0; irow <roc0.GetNrows(); irow++){
     651           0 :     for (UInt_t ipad = 0; ipad <roc0.GetNPads(irow); ipad++){
     652           0 :       Float_t value  = irow+ipad/1000.;
     653           0 :       roc0.SetValue(irow,ipad,value);
     654             :     }
     655             :   }
     656             :   
     657             :   // copy CalROC, readout values and compare to original
     658           0 :   AliTPCCalROC roc1(roc0);
     659           0 :   for (UInt_t irow = 0; irow <roc1.GetNrows(); irow++){
     660           0 :     for (UInt_t ipad = 0; ipad <roc1.GetNPads(irow); ipad++){
     661           0 :       Float_t value  = irow+ipad/1000.;
     662           0 :       if (roc1.GetValue(irow,ipad)!=value){
     663           0 :         printf("Read/Write error\trow=%d\tpad=%d\n",irow,ipad);
     664             :       }
     665             :     }
     666             :   }
     667             : 
     668             :   // write original CalROC to file
     669           0 :   TFile f("calcTest.root","recreate");
     670           0 :   roc0.Write("Roc0");
     671           0 :   AliTPCCalROC * roc2 = (AliTPCCalROC*)f.Get("Roc0");
     672           0 :   f.Close();
     673             :   
     674             :   // read CalROC from file and compare to original CalROC
     675           0 :   for (UInt_t irow = 0; irow <roc0.GetNrows(); irow++){
     676           0 :     if (roc0.GetNPads(irow)!=roc2->GetNPads(irow))
     677           0 :       printf("NPads - Read/Write error\trow=%d\n",irow);
     678           0 :     for (UInt_t ipad = 0; ipad <roc1.GetNPads(irow); ipad++){
     679           0 :       Float_t value  = irow+ipad/1000.;
     680           0 :       if (roc2->GetValue(irow,ipad)!=value){
     681           0 :         printf("Read/Write error\trow=%d\tpad=%d\n",irow,ipad);
     682             :       }
     683             :     }
     684             :   }
     685             : 
     686             :   // 
     687             :   // Algebra Tests
     688             :   //
     689             :   
     690             :   // Add constant
     691           0 :   AliTPCCalROC roc3(roc0);
     692           0 :   roc3.Add(1.5);
     693           0 :   for (UInt_t irow = 0; irow <roc3.GetNrows(); irow++){
     694           0 :     for (UInt_t ipad = 0; ipad <roc3.GetNPads(irow); ipad++){
     695           0 :       Float_t value  = irow+ipad/1000. + 1.5;
     696           0 :       if (TMath::Abs(roc3.GetValue(irow,ipad)-value) > kEpsilon){
     697           0 :         printf("Add constant - error\trow=%d\tpad=%d\n",irow,ipad);
     698             :       }
     699             :     }
     700             :   }
     701             : 
     702             :   // Add another CalROC
     703           0 :   AliTPCCalROC roc4(roc0);
     704           0 :   roc4.Add(&roc0, -1.5);
     705           0 :   for (UInt_t irow = 0; irow <roc4.GetNrows(); irow++){
     706           0 :     for (UInt_t ipad = 0; ipad <roc4.GetNPads(irow); ipad++){
     707           0 :       Float_t value  = irow+ipad/1000. - 1.5 * (irow+ipad/1000.);
     708           0 :       if (TMath::Abs(roc4.GetValue(irow,ipad)-value) > kEpsilon){
     709           0 :         printf("Add CalROC - error\trow=%d\tpad=%d\n",irow,ipad);
     710             :       }
     711             :     }
     712             :   }
     713             :   
     714             :   // Multiply with constant
     715           0 :   AliTPCCalROC roc5(roc0);
     716           0 :   roc5.Multiply(-1.4);
     717           0 :   for (UInt_t irow = 0; irow <roc5.GetNrows(); irow++){
     718           0 :     for (UInt_t ipad = 0; ipad <roc5.GetNPads(irow); ipad++){
     719           0 :       Float_t value  = (irow+ipad/1000.) * (-1.4);
     720           0 :       if (TMath::Abs(roc5.GetValue(irow,ipad)-value) > kEpsilon){
     721           0 :         printf("Multiply with constant - error\trow=%d\tpad=%d\n",irow,ipad);
     722             :       }
     723             :     }
     724             :   }
     725             : 
     726             :   // Multiply another CalROC
     727           0 :   AliTPCCalROC roc6(roc0);
     728           0 :   roc6.Multiply(&roc0);
     729           0 :   for (UInt_t irow = 0; irow <roc6.GetNrows(); irow++){
     730           0 :     for (UInt_t ipad = 0; ipad <roc6.GetNPads(irow); ipad++){
     731           0 :       Float_t value  = (irow+ipad/1000.) * (irow+ipad/1000.);
     732           0 :       if (TMath::Abs(roc6.GetValue(irow,ipad)-value) > kEpsilon*100){
     733           0 :         printf("Multiply with CalROC - error\trow=%d\tpad=%d\n",irow,ipad);
     734             :       }
     735             :     }
     736             :   }
     737             : 
     738             : 
     739             :   // Divide by CalROC
     740           0 :   AliTPCCalROC roc7(roc0);
     741           0 :   roc7.Divide(&roc0);
     742           0 :   for (UInt_t irow = 0; irow <roc7.GetNrows(); irow++){
     743           0 :     for (UInt_t ipad = 0; ipad <roc7.GetNPads(irow); ipad++){
     744             :       Float_t value  = 1.;
     745           0 :       if (irow+ipad == 0) value = roc0.GetValue(irow,ipad);
     746           0 :       if (TMath::Abs(roc7.GetValue(irow,ipad)-value) > kEpsilon){
     747           0 :         printf("Multiply with CalROC - error\trow=%d\tpad=%d\n",irow,ipad);
     748             :       }
     749             :     }
     750             :   }
     751             : 
     752             :   //
     753             :   // Statistics Test
     754             :   //
     755             :   
     756             :   // create CalROC with defined values
     757           0 :   TRandom3 rnd(0);
     758           0 :   AliTPCCalROC sroc0(0);
     759           0 :   for (UInt_t ichannel = 0; ichannel < sroc0.GetNchannels(); ichannel++){
     760           0 :     Float_t value  = rnd.Gaus(10., 2.);
     761           0 :     sroc0.SetValue(ichannel,value);
     762             :   }
     763             : 
     764           0 :   printf("Mean   (should be close to 10): %f\n", sroc0.GetMean());
     765           0 :   printf("RMS    (should be close to  2): %f\n", sroc0.GetRMS());
     766           0 :   printf("Median (should be close to 10): %f\n", sroc0.GetMedian());
     767           0 :   printf("LTM    (should be close to 10): %f\n", sroc0.GetLTM());
     768             : 
     769             :   //AliTPCCalROC* sroc1 = sroc0.LocalFit(4, 8);
     770             :   
     771             :   //delete sroc1;
     772             : 
     773             : //        std::cout << TMath::Abs(roc5.GetValue(irow,ipad)-value) << std::endl;
     774           0 : }
     775             : 
     776             : 
     777             : AliTPCCalROC * AliTPCCalROC::LocalFit(Int_t rowRadius, Int_t padRadius, AliTPCCalROC* ROCoutliers, Bool_t robust, Double_t chi2Threshold, Double_t robustFraction) {
     778             :   /// MakeLocalFit - smoothing
     779             :   /// returns a AliTPCCalROC with smoothed data
     780             :   /// rowRadius and padRadius specifies a window around a given pad. 
     781             :   /// The data of this window are fitted with a parabolic function. 
     782             :   /// This function is evaluated at the pad's position.
     783             :   /// At the edges the window is shifted, so that the specified pad is not anymore in the center of the window. 
     784             :   /// rowRadius  -  radius - rows to be used for smoothing
     785             :   /// padradius  -  radius - pads to be used for smoothing
     786             :   /// ROCoutlier -  map of outliers - pads not to be used for local smoothing
     787             :   /// robust     -  robust method of fitting  - (much slower)
     788             :   /// chi2Threshold: Threshold for chi2 when EvalRobust is called
     789             :   /// robustFraction: Fraction of data that will be used in EvalRobust
     790             : 
     791           0 :   AliTPCCalROC * xROCfitted = new AliTPCCalROC(fSector);
     792           0 :   TLinearFitter fitterQ(6,"hyp5");
     793             :    // TLinearFitter fitterQ(6,"x0++x1++x2++x3++x4++x5");
     794           0 :   fitterQ.StoreData(kTRUE);
     795           0 :   for (UInt_t row=0; row < GetNrows(); row++) {
     796             :     //std::cout << "Entering row " << row << " of " << GetNrows() << " @ sector "<< fSector << " for local fitting... "<< std::endl;
     797           0 :     for (UInt_t pad=0; pad < GetNPads(row); pad++)
     798           0 :       xROCfitted->SetValue(row, pad, GetNeighbourhoodValue(&fitterQ, row, pad, rowRadius, padRadius, ROCoutliers, robust, chi2Threshold, robustFraction));
     799             :   }
     800             :   return xROCfitted;
     801           0 : }
     802             : 
     803             : 
     804             : Double_t AliTPCCalROC::GetNeighbourhoodValue(TLinearFitter* fitterQ, Int_t row, Int_t pad, Int_t rRadius, Int_t pRadius, AliTPCCalROC *const ROCoutliers, Bool_t robust, Double_t chi2Threshold, Double_t robustFraction) {
     805             :   /// AliTPCCalROC::GetNeighbourhoodValue - smoothing - PRIVATE
     806             :   /// in this function the fit for LocalFit is done
     807             : 
     808           0 :   fitterQ->ClearPoints();
     809           0 :   TVectorD fitParam(6);
     810             :   Int_t    npoints=0;
     811           0 :   Double_t xx[6];
     812             :   Float_t dlx, dly;
     813           0 :   Float_t lPad[3] = {0};
     814           0 :   Float_t localXY[3] = {0};
     815             :   
     816           0 :   AliTPCROC* tpcROCinstance = AliTPCROC::Instance();
     817           0 :   tpcROCinstance->GetPositionLocal(fSector, row, pad, lPad);  // calculate position lPad by pad and row number
     818             :   
     819           0 :   TArrayI *neighbourhoodRows = 0;
     820           0 :   TArrayI *neighbourhoodPads = 0;
     821             :   
     822             :   //std::cerr << "Trying to get neighbourhood for row " << row << ", pad " << pad << std::endl;
     823           0 :   GetNeighbourhood(neighbourhoodRows, neighbourhoodPads, row, pad, rRadius, pRadius);
     824             :   //std::cerr << "Got neighbourhood for row " << row << ", pad " << pad << std::endl;
     825             :   
     826             :   Int_t r, p;
     827           0 :   for (Int_t i=0; i < (2*rRadius+1)*(2*pRadius+1); i++) {
     828           0 :     r = neighbourhoodRows->At(i);
     829           0 :     p = neighbourhoodPads->At(i);
     830           0 :     if (r == -1 || p == -1) continue;   // window is bigger than ROC
     831           0 :     tpcROCinstance->GetPositionLocal(fSector, r, p, localXY);   // calculate position localXY by pad and row number
     832           0 :     dlx = lPad[0] - localXY[0];
     833           0 :     dly = lPad[1] - localXY[1];
     834             :     //xx[0] = 1;
     835           0 :     xx[1] = dlx;
     836           0 :     xx[2] = dly;
     837           0 :     xx[3] = dlx*dlx;
     838           0 :     xx[4] = dly*dly;
     839           0 :     xx[5] = dlx*dly;
     840           0 :     if (!ROCoutliers || ROCoutliers->GetValue(r,p) != 1) {
     841           0 :       fitterQ->AddPoint(&xx[1], GetValue(r, p), 1);
     842           0 :       npoints++;
     843           0 :     }
     844             :   }
     845             :   
     846           0 :   delete neighbourhoodRows;
     847           0 :   delete neighbourhoodPads;
     848             :   
     849           0 :   if (npoints < 0.5 * ((2*rRadius+1)*(2*pRadius+1)) ) {
     850             :     // std::cerr << "Too few data points for fitting @ row " << row << ", pad " << pad << " in sector " << fSector << std::endl;
     851           0 :     return 0.;  // for diagnostic
     852             :   }
     853           0 :   fitterQ->Eval();
     854           0 :   fitterQ->GetParameters(fitParam);
     855             :   Float_t chi2Q = 0;
     856           0 :   if (robust) chi2Q = fitterQ->GetChisquare()/(npoints-6.);
     857             :   //if (robust) chi2Q = fitterQ->GetChisquare()/(npoints-6.);
     858           0 :   if (robust && chi2Q > chi2Threshold) {
     859             :     //std::cout << "robust fitter called... " << std::endl;
     860           0 :     fitterQ->EvalRobust(robustFraction);
     861           0 :     fitterQ->GetParameters(fitParam);
     862             :   }
     863           0 :   Double_t value = fitParam[0];
     864             :   
     865             :   //if (value < 0) std::cerr << "negative fit-value " << value << " in sector "<< this->fSector << " @ row: " << row << " and pad: " << pad << ", with fitter Chi2 = " << chi2Q <<  std::endl;
     866             :   return value;
     867           0 : }
     868             : 
     869             : 
     870             : 
     871             : 
     872             : void AliTPCCalROC::GetNeighbourhood(TArrayI* &rowArray, TArrayI* &padArray, Int_t row, Int_t pad, Int_t rRadius, Int_t pRadius) {
     873             :   /// AliTPCCalROC::GetNeighbourhood - PRIVATE
     874             :   /// in this function the window for LocalFit is determined
     875             : 
     876           0 :   rowArray = new TArrayI((2*rRadius+1)*(2*pRadius+1));
     877           0 :   padArray = new TArrayI((2*rRadius+1)*(2*pRadius+1));
     878             :   
     879           0 :   Int_t rmin = row - rRadius;
     880           0 :   UInt_t rmax = row + rRadius;
     881             :   
     882             :   // if window goes out of ROC
     883           0 :   if (rmin < 0) {
     884           0 :     rmax = rmax - rmin;
     885             :     rmin = 0;
     886           0 :   }
     887           0 :   if (rmax >= GetNrows()) {
     888           0 :     rmin = rmin - (rmax - GetNrows()+1);
     889           0 :     rmax = GetNrows() - 1;
     890           0 :       if (rmin  < 0 ) rmin = 0; // if the window is bigger than the ROC
     891             :   }
     892             :   
     893             :   Int_t pmin, pmax;
     894             :   Int_t i = 0;
     895             :   
     896           0 :   for (UInt_t r = rmin; r <= rmax; r++) {
     897           0 :     pmin = pad - pRadius;
     898           0 :     pmax = pad + pRadius;
     899           0 :     if (pmin < 0) {
     900           0 :       pmax = pmax - pmin;
     901             :       pmin = 0;
     902           0 :     }
     903           0 :     if (pmax >= (Int_t)GetNPads(r)) {
     904           0 :       pmin = pmin - (pmax - GetNPads(r)+1);
     905           0 :       pmax = GetNPads(r) - 1;
     906           0 :       if (pmin  < 0 ) pmin = 0; // if the window is bigger than the ROC
     907             :     }
     908           0 :     for (Int_t p = pmin; p <= pmax; p++) {
     909           0 :       (*rowArray)[i] = r;
     910           0 :       (*padArray)[i] = p;
     911           0 :       i++;
     912             :     }
     913             :   }
     914           0 :   for (Int_t j = i; j < rowArray->GetSize(); j++){  // unused padArray-entries, in the case that the window is bigger than the ROC
     915             :     //std::cout << "trying to write -1" << std::endl;
     916           0 :     (*rowArray)[j] = -1;
     917           0 :     (*padArray)[j] = -1;
     918             :     //std::cout << "writing -1" << std::endl;
     919             :   }
     920           0 : }
     921             : 
     922             : 
     923             : 
     924             : void AliTPCCalROC::GlobalFit(const AliTPCCalROC* ROCoutliers, Bool_t robust, TVectorD &fitParam, TMatrixD &covMatrix, Float_t & chi2, Int_t fitType, Double_t chi2Threshold, Double_t robustFraction, Double_t err, EPadType padType){
     925             :   /// Makes a  GlobalFit for the given sector and return fit-parameters, covariance and chi2
     926             :   /// update of GlobalFit in 2015 to have different gain in OROC medium and long pads
     927             :   /// The origin of the fit function is the center of the ROC!
     928             :   /// fitType == 0: fit plane function
     929             :   /// fitType == 1: fit parabolic function
     930             :   /// ROCoutliers - pads with value !=0 are not used in fitting procedure
     931             :   /// chi2Threshold: Threshold for chi2 when EvalRobust is called
     932             :   /// robustFraction: Fraction of data that will be used in EvalRobust
     933             :   /// err: error of the data points
     934             : 
     935           0 :   if(fSector<36) padType=kAll;
     936             : 
     937             :   TLinearFitter* fitterG = 0;
     938           0 :   Double_t xx[6];
     939             :   
     940           0 :   if (fitType  == 1) {
     941           0 :     fitterG = new TLinearFitter (6,"x0++x1++x2++x3++x4++x5");
     942           0 :     fitParam.ResizeTo(6);
     943           0 :     covMatrix.ResizeTo(6,6);
     944           0 :   } else {
     945           0 :     fitterG = new TLinearFitter(3,"x0++x1++x2");
     946           0 :     fitParam.ResizeTo(3);
     947           0 :     covMatrix.ResizeTo(3,3);
     948             :   }
     949           0 :   fitterG->StoreData(kTRUE);   
     950           0 :   fitterG->ClearPoints();
     951             :   Int_t    npoints=0;
     952             :   
     953             :   Float_t dlx, dly;
     954           0 :   Float_t centerPad[3] = {0};
     955           0 :   Float_t localXY[3] = {0};
     956             :   
     957           0 :   AliTPCROC* tpcROCinstance = AliTPCROC::Instance();
     958           0 :   if(padType==kAll)
     959           0 :     tpcROCinstance->GetPositionLocal(fSector, GetNrows()/2, GetNPads(GetNrows()/2)/2, centerPad);  // calculate center of ROC 
     960           0 :   else if(padType==kOROCmedium)  
     961           0 :     tpcROCinstance->GetPositionLocal(fSector, 64/2, GetNPads(64/2)/2, centerPad);  // calculate center of ROC medium pads
     962           0 :   else if(padType==kOROClong)
     963           0 :     tpcROCinstance->GetPositionLocal(fSector, (GetNrows()-64)/2+64, GetNPads((GetNrows()-64)/2+64)/2, centerPad);  // calculate center of ROC long pads
     964             : 
     965             :   UInt_t irowMin = 0;
     966           0 :   UInt_t irowMax = GetNrows();
     967           0 :   if(padType==kOROCmedium) irowMax = 64;
     968           0 :   else if(padType==kOROClong) irowMin = 64;
     969             : 
     970             :   // loop over all channels and read data into fitterG
     971           0 :   for (UInt_t irow = irowMin; irow < irowMax; irow++) {
     972           0 :     for (UInt_t ipad = 0; ipad < GetNPads(irow); ipad++) {
     973             :       // fill fitterG
     974           0 :       if (ROCoutliers && ROCoutliers->GetValue(irow, ipad) != 0) continue;
     975           0 :       tpcROCinstance->GetPositionLocal(fSector, irow, ipad, localXY);   // calculate position localXY by pad and row number
     976           0 :       dlx = localXY[0] - centerPad[0];
     977           0 :       dly = localXY[1] - centerPad[1];
     978           0 :       xx[0] = 1;
     979           0 :       xx[1] = dlx;
     980           0 :       xx[2] = dly;
     981           0 :       xx[3] = dlx*dlx;
     982           0 :       xx[4] = dly*dly;
     983           0 :       xx[5] = dlx*dly;
     984           0 :       npoints++;
     985           0 :       fitterG->AddPoint(xx, GetValue(irow, ipad), err);
     986           0 :     }
     987             :   }
     988           0 :   if(npoints>10) { // make sure there is something to fit
     989           0 :     fitterG->Eval();
     990           0 :     fitterG->GetParameters(fitParam);
     991           0 :     fitterG->GetCovarianceMatrix(covMatrix);
     992           0 :     if (fitType == 1)
     993           0 :       chi2 = fitterG->GetChisquare()/(npoints-6.);
     994           0 :     else chi2 = fitterG->GetChisquare()/(npoints-3.);
     995           0 :     if (robust && chi2 > chi2Threshold) {
     996             :       //    std::cout << "robust fitter called... " << std::endl;
     997           0 :       fitterG->EvalRobust(robustFraction);
     998           0 :       fitterG->GetParameters(fitParam);
     999           0 :     }
    1000             :   } else {
    1001             :     // set parameteres to 0
    1002             :     Int_t nParameters = 3;
    1003           0 :     if (fitType  == 1)
    1004             :       nParameters = 6;
    1005             : 
    1006           0 :     for(Int_t i = 0; i < nParameters; i++)
    1007           0 :       fitParam[i] = 0;
    1008             :   }
    1009             :   
    1010           0 :   delete fitterG;
    1011           0 : }
    1012             : 
    1013             : AliTPCCalROC* AliTPCCalROC::CreateGlobalFitCalROC(TVectorD &fitParam, Int_t sector, EPadType padType, AliTPCCalROC *oldTPCCalROC ){
    1014             :   /// Create ROC with global fit parameters
    1015             :   /// The origin of the fit function is the center of the ROC!
    1016             :   /// loop over all channels, write fit values into new ROC and return it
    1017             :   /// In 2015 different gain in medium and long pads 
    1018             :   /// New CalROC is created for medium pads.
    1019             :   /// For long pads oldTPCCalROC already contains values for medium pads.
    1020             : 
    1021           0 :   if(sector<36) padType=kAll;
    1022             : 
    1023             :   Float_t dlx, dly;
    1024           0 :   Float_t centerPad[3] = {0};
    1025           0 :   Float_t localXY[3] = {0};
    1026             :   AliTPCCalROC * xROCfitted = NULL;
    1027           0 :   if(oldTPCCalROC!=0 && padType!=kAll) xROCfitted = oldTPCCalROC;
    1028           0 :   else xROCfitted = new AliTPCCalROC(sector);
    1029           0 :   AliTPCROC* tpcROCinstance = AliTPCROC::Instance();
    1030           0 :   if(padType==kAll)
    1031           0 :     tpcROCinstance->GetPositionLocal(sector, xROCfitted->GetNrows()/2, xROCfitted->GetNPads(xROCfitted->GetNrows()/2)/2, centerPad);  // calculate center of ROC 
    1032           0 :   else if(padType==kOROCmedium)
    1033           0 :     tpcROCinstance->GetPositionLocal(sector, 64/2, xROCfitted->GetNPads(64/2)/2, centerPad);  // calculate center of ROC medium pads 
    1034           0 :   else if(padType==kOROClong)
    1035           0 :     tpcROCinstance->GetPositionLocal(sector, (xROCfitted->GetNrows()-64)/2+64, xROCfitted->GetNPads((xROCfitted->GetNrows()-64)/2+64)/2, centerPad);  // calculate center of ROC long pads 
    1036             : 
    1037             :   UInt_t irowMin = 0;
    1038           0 :   UInt_t irowMax = xROCfitted->GetNrows();
    1039           0 :   if(padType==kOROCmedium) irowMax = 64;
    1040           0 :   else if(padType==kOROClong) irowMin = 64;
    1041             : 
    1042             :   Int_t fitType = 1;
    1043           0 :   if (fitParam.GetNoElements() == 6) fitType = 1;
    1044             :   else fitType = 0;
    1045             :   Double_t value = 0;
    1046           0 :   if (fitType == 1) { // parabolic fit
    1047           0 :     for (UInt_t irow = irowMin; irow < irowMax; irow++) {
    1048           0 :       for (UInt_t ipad = 0; ipad < xROCfitted->GetNPads(irow); ipad++) {
    1049           0 :         tpcROCinstance->GetPositionLocal(sector, irow, ipad, localXY);   // calculate position localXY by pad and row number
    1050           0 :         dlx = localXY[0] - centerPad[0];
    1051           0 :         dly = localXY[1] - centerPad[1];
    1052           0 :         value = fitParam[0] + fitParam[1]*dlx + fitParam[2]*dly + fitParam[3]*dlx*dlx + fitParam[4]*dly*dly + fitParam[5]*dlx*dly;
    1053           0 :         xROCfitted->SetValue(irow, ipad, value);
    1054             :       }
    1055             :     }   
    1056           0 :   }
    1057             :   else {  // linear fit
    1058           0 :     for (UInt_t irow = irowMin; irow < irowMax; irow++) {
    1059           0 :       for (UInt_t ipad = 0; ipad < xROCfitted->GetNPads(irow); ipad++) {
    1060           0 :         tpcROCinstance->GetPositionLocal(sector, irow, ipad, localXY);   // calculate position localXY by pad and row number
    1061           0 :         dlx = localXY[0] - centerPad[0];
    1062           0 :         dly = localXY[1] - centerPad[1];
    1063           0 :         value = fitParam[0] + fitParam[1]*dlx + fitParam[2]*dly;
    1064           0 :         xROCfitted->SetValue(irow, ipad, value);
    1065             :       }
    1066             :     }   
    1067             :   }
    1068           0 :   return xROCfitted;
    1069           0 : }
    1070             : 

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